Development of harmful algal bloom monitoring methods and forecast system for sustainable aquaculture and coastal fisheries in Chile (Monitoring of algae in Chile)


Research publications

Joint publications between Chile and Japan (original articles)

  • 2019
    • Airborne microbial communities at high-altitude and suburban sites in Toyama, Japan suggest a new perspective for bioprospecting 10.3389/fbioe.2019.00012
  • 2018
    • F. P. Cid, F. Maruyama, K. Murase, S. P. Graether, G. Larama, L. A. Bravo, *M. A. Jorquera. Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere. Extremophiles. doi: 10.1007/s00792-018-1015-x

Other publications (original articles)

  • 2019

    • °*M. A. Jorquera, S. P. Graether, F. Maruyama. Editorial: bioprospecting and biotechnology of extremophiles. Front. Bioeng. Biotechnol. doi: 10.3389/fbioe.2019.00204. 2019. 
    • °K. Arikawa, T. Ichijo, S. Nakajima, Y. Nishiuchi, H. Yano, A. Tamaru, S. Yoshida, F. Maruyama, A. Ota, M. Nasu, D. A. Starkova, I. Mokrousov, O. V. Narvskaya, T. Iwamotoa. Genetic relatedness of Mycobacterium avium subsp. hominissuis isolates from bathrooms of healthy volunteers, rivers, and soils in Japan with human clinical isolates from different geographical areas.
      Infect. Genet. Evol. 74:103923. 2019. 
    • °T. Komatsu, K. Ohya, K. Sawai, J. O. Odoi, K. Otsu, A. Ota, T. Ito, M. Kawai, *F. Maruyama. Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm.
      BMC Res. Notes 12:341. 2019. 
    • °Y. Minato, D. M. Gohl, J. M. Thiede, J. M. Chacón, W. R. Harcombe, F. Maruyama, *A. D. Baughn. Genome-wide assessment of Mycobacterium tuberculosis conditionally essential metabolic pathways.
      mSystems 4: e00070-19. 2019. 
    • °*N. Sari, *N. Mertaniasih, Soedarsono, F. Maruyama. Application of serial tests for Mycobacterium tuberculosis detection to active lung tuberculosis cases in Indonesia.
      BMC Res. Notes 12:313. 2019. 
    • °Y. Minato, D. M. Gohl, J. M. Thiede, J. M. Chacón, W. R. Harcombe, F. Maruyama, *A. D. Baughn. Genome-wide assessment of Mycobacterium tuberculosis conditionally essential metabolic pathways.
      biorxiv. ” doi: 2019. 
    • °K. Núñez-Montero, C. Lamilla, M. Abanto, F. Maruyama, M. A. Jorquera, A. Santos, J. Martinez-Urtaza, L. Barrientos*. Antarctic Streptomyces fildesensis So13.3 strain as a promising source for antimicrobials discovery. Sci. Rep. 9:7488. 2019. 
  • 2018
    • T. Ito, M. Kawai, K. Nozaki, K. Otsu, H. Fukushi, K. Ohya and Maruyama, F. Draft Genome Sequences of Mycolicibacter senuensis Isolate GF74 and Mycobacterium colombiense Isolates GF28 and GF76 from a Swine Farm in Japan., Microbiol Res Announc, 2018, 7, 10, e00936-18 DOI: 10.1128/MRA.00936-18
    • A. Ogura, Y. Akizuki, H. Imoda, K. Mienta, T. Gojobori and Nagai S., Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom., BMC Genomics, 2018, 19, 765, 10.1186/s12864-018-5144-5
    • Y. Furuta, H. Harima, E. Ito, F. Maruyama, N. Ohnishi, K. Osaki, H. Ogawa, D. Squarre, B. Hang’ombe, H. Higashi. Loss of bacitracin resistance due to a large genomic deletion among Bacillus anthracis strains. mSystems, 2018, 3, 5. e00182-18. 10.1128/mSystems.00182-18
    • T. Okubo, M. Yossapol, F. Maruyama, E. M. Wampande, S. Kakooza, K. Ohya, S. Tsuchida, T. Asai, J. D. Kabasa, K. Ushida. Phenotypic and genotypic analyses of antimicrobial- resistant bacteria in livestock in Uganda. Transboundary Emerg. Dis. 2019, 66, 317-326. 10.1111/tbed.13024. 2018.
    • D. Tanaka, K. Sato, M. Goto, S. Fujiyoshi, F. Maruyama, S. Takato, T. Shimada, A. Sakatoku, K. Aoki, S. Nakamura. Airborne microbial communities at high-altitude and suburban sites in Toyama, Japan suggest a new perspective for bioprospecting.
      Front. Bioeng. Biotechnol. 7:12.  doi: 10.3389/fbioe.2019.00012. 2019. 
    • S. Ueki hylogeographic characteristics of hypervariable regions in the mitochondrial genome of a cosmopolitan, bloom-forming raphidophyte, Heterosigma akashiwo. Journal of Phycology 55(4):858-867
    • °*L. Nonaka, T. Yamamoto, F. Maruyama, Y. Hirose, Y. Onishi, T. Kobayashi, S. Suzuki, N. Nomura, M. Masuda, *H. Yano. Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate. 
      PLoS One 13(6):e0198613. 2018. 
    •  °T. Ito, F. Maruyama, K. Sawai, K. Nozaki, K. Otsu, *K. Ohya. Draft Genome Sequence of Mycobacterium virginiense Strain GF75 Isolated from the Mud of a Swine Farm in Japan.
      Genome Announc. 6. pii: e00362-18. 2018. 
    •  °Y. Sugimoto, F. Maruyama, *S. Suzuki. Draft Genome Sequence of a Shewanella halifaxensis Strain Isolated from the Intestine of Marine Red Seabream (Pagrus major): Coding Integrative Conjugative Element with Macrolide Resistance Genes. Genome Announc. 6. pii: e00297-18. 2018. 
    •  °*K. Okada, W. Wongboot, S. Chantaroj, W. Natakuathung, A. Roobthaisong, W. Kamjumphol, F. Maruyama, T. Takemura, I. Nakagawa, M. Ohnishi, S. Hamada. Vibrio cholerae embraces two major evolutionary traits as revealed by targeted gene sequencing. Sci. Rep. 12:e0184720. 2018. 
    •  °N. Tajima, Y. Kanesaki, S. Sato, H. Yoshikawa, F. Maruyama, K. Kurokawa, H. Ohta, T. Nishizawa, M. Asayama, *N. Sato. Complete genome sequence of Limnothrix/Pseudanabaena sp. ABRG5-3, a non-heterocystous cyanobacterium isolated from Japanese freshwater. Genome Announc. 6: pii: e01608-17. 2018. 
    • °S. Arai, H. Kim, T. Watanabe, M. Tohya, E. Suzuki, K. Ishida-Kuroki, F. Maruyama, K. Murase, I. Nakagawa, *T. Sekizaki. Assessment of pig saliva as a Streptococcus suis reservoir and potential source of infection on farms by use of a novel quantitative polymerase chain reaction assay.
      Am. J. Vet. Res. 79:941-948. 2018. 

Joint publications between Chile and Japan (review articles etc.)

  • 2018
    • Japan and Chile Team up Against Red Tide, JICA’s WORLD, 10, 2, pp. 8-9, 2018

Other publications (review articles etc.)

  • 2019
    • *M. A. Jorquera, S. P. Graether, F. Maruyama. Editorial: Bioprospecting and Biotechnology of Extremophiles.
      Front. Bioeng. Biotechnol. In press. 2019. 
    • Science with industry: Microbes are us. But how can we see them?
      KYOTO U Research News Spring, 2019 
  • 2018
    • T. Ito, M. Okura, F. Maruyama. Acquired and innate immunity in prokaryotes define their evolutionary story in DNA traffic in the environment, Springer47-75. 2019.
    • オンサイトシーケンシングを可能にするスーツケースラボ, 日本バイオインフォマティクス学会ニュースレター, 34号 pp.10.
    • JICAチリ支所便り, 2018年, 64号, pp.2.
    • J.I. Rillinga, J.A. Acuña, P. Nannipieri, F. Cassan, F. Maruyama, M.A. Jorquera. Current opinion on methods and perspectives for tracking and monitoring of plant growth‒promoting bacteria. Soil Biology & Biochemistry.
    • °芝多佳彦、藤吉奏、須藤毅顕、竹内康雄、*丸山史人. 口腔内における複合微生物感染症のホロゲノム動態を時空間的に理解する. 最新医学 73(4): 509-522, 2018.
  • 2017
    • S. Fujiyoshi, D. Tanaka, F. Maruyama. Transmission of airborne bacteria across built environments and its measurement standards: a review. Front. Microbiol. 8:2336. doi: 10.3389/fmicb.2017.02336.
    • 丸山史人, 持ち運び可能な小型NGS, 日経バイオテク, 2017年, 859号, pp. 46-47.
    • JICAチリ支所便り, 2017年, 59号, pp.1-3.

Courses and manuals

  • 2018
    • IFOPプンタレナス支所、サンプリングワークショップ、3名